<!ELEMENT sanac (model)>
<!ATTLIST sanac frame CDATA #REQUIRED>
<!ATTLIST sanac frameInfo CDATA #REQUIRED>
<!ELEMENT model (panel?, listOfCompartments, listOfSpecieClasses?, listOfSpecies, listOfReactions+, listOfWhiteBoxes?)>
<!ATTLIST model name CDATA #REQUIRED>
<!ATTLIST model modelInfo CDATA #IMPLIED>
<!ELEMENT panel EMPTY>
<!ATTLIST panel size CDATA #IMPLIED>
<!ATTLIST panel magnification CDATA #IMPLIED>
<!ELEMENT listOfCompartments (compartment+)>
<!ATTLIST listOfCompartments numberOfCompartments CDATA "1">
<!ELEMENT compartment (subCompartment+)>
<!ATTLIST compartment name CDATA #REQUIRED>
<!ATTLIST compartment volume CDATA #IMPLIED>
<!ATTLIST compartment R CDATA #IMPLIED>
<!ATTLIST compartment G CDATA #IMPLIED>
<!ATTLIST compartment B CDATA #IMPLIED>
<!ELEMENT subCompartment EMPTY>
<!ATTLIST subCompartment id CDATA #REQUIRED>
<!ATTLIST subCompartment cat CDATA #IMPLIED>
<!ATTLIST subCompartment cx CDATA #IMPLIED>
<!ATTLIST subCompartment cy CDATA #IMPLIED>
<!ATTLIST subCompartment l CDATA #IMPLIED>
<!ATTLIST subCompartment h CDATA #IMPLIED>
<!ATTLIST subCompartment w CDATA #IMPLIED>
<!ELEMENT listOfSpecieClasses (specieClass+)>
<!ELEMENT specieClass EMPTY>
<!ATTLIST specieClass R CDATA #IMPLIED>
<!ATTLIST specieClass G CDATA #IMPLIED>
<!ATTLIST specieClass B CDATA #IMPLIED>
<!ELEMENT listOfSpecies (Specie+)>
<!ATTLIST listOfSpecies numberOfSpecies CDATA "1">
<!ELEMENT Specie (specieAttribute, listOfElements?)>
<!ATTLIST Specie specieID CDATA #REQUIRED>
<!ATTLIST Specie name CDATA #REQUIRED>
<!ATTLIST Specie compartment CDATA #REQUIRED>
<!ELEMENT specieAttribute EMPTY>
<!ATTLIST specieAttribute specieClass CDATA #REQUIRED>
<!ATTLIST specieAttribute massBalance (on|off) "on">
<!ATTLIST specieAttribute totalAmount (variable|constant) "variable">
<!ATTLIST specieAttribute decomposition (on|off) "on">
<!ATTLIST specieAttribute initialAmount CDATA #IMPLIED>
<!ATTLIST specieAttribute isVisible (true|false) "true">
<!ELEMENT listOfElements (specieReference+)>
<!ATTLIST listOfElements numberOfElements CDATA "2">
<!ELEMENT specieReference (lineLocation?)>
<!ATTLIST specieReference specieID CDATA #REQUIRED>
<!ATTLIST specieReference name CDATA #REQUIRED>
<!ATTLIST specieReference compartment CDATA #REQUIRED>
<!ATTLIST specieReference stoichiometry CDATA "1">
<!ATTLIST specieReference cx CDATA #IMPLIED>
<!ATTLIST specieReference cy CDATA #IMPLIED>
<!ELEMENT lineLocation (segmentStatus*)>
<!ATTLIST lineLocation x1 CDATA #IMPLIED>
<!ATTLIST lineLocation x2 CDATA #IMPLIED>
<!ATTLIST lineLocation y1 CDATA #IMPLIED>
<!ATTLIST lineLocation y2 CDATA #IMPLIED>
<!ATTLIST lineLocation connectSegmentPoint CDATA #IMPLIED>
<!ELEMENT segmentStatus EMPTY>
<!ATTLIST segmentStatus counter CDATA #IMPLIED>
<!ATTLIST segmentStatus x CDATA #IMPLIED>
<!ATTLIST segmentStatus y CDATA #IMPLIED>
<!ELEMENT listOfReactions (Reaction+)>
<!ATTLIST listOfReactions layer (gene0|gene1|gene_other|protein|metabolic) "gene0">
<!ATTLIST listOfReactions numberOfReactions CDATA "1">
<!ELEMENT Reaction (listOfReactants, listOfProducts?, listOfModifiers?, modifierComplex?, lineLocation?, multiArmsReaction?)>
<!ATTLIST Reaction reactionID CDATA #REQUIRED>
<!ATTLIST Reaction groupID CDATA #REQUIRED>
<!ATTLIST Reaction reactionType CDATA #REQUIRED>
<!ATTLIST Reaction isConvertible (true|false) "true">
<!ATTLIST Reaction reactionName CDATA #REQUIRED>
<!ATTLIST Reaction isVisible (true|false) "true">
<!ATTLIST Reaction modifierReactionEquation CDATA #REQUIRED>
<!ELEMENT listOfReactants (specieReference*, reactionReference?)>
<!ATTLIST listOfReactants numberOfReactants CDATA "1">
<!ELEMENT reactionReference EMPTY>
<!ATTLIST reactionReference reactionID CDATA #REQUIRED>
<!ATTLIST reactionReference reactionName CDATA #REQUIRED>
<!ELEMENT listOfProducts (specieReference+)>
<!ATTLIST listOfProducts numberOfProducts CDATA "1">
<!ELEMENT listOfModifiers (modifierSpecieReference)>
<!ATTLIST listOfModifiers numberOfModifiers CDATA "1">
<!ELEMENT modifierSpecieReference (lineLocation?)>
<!ATTLIST modifierSpecieReference specieID CDATA #REQUIRED>
<!ATTLIST modifierSpecieReference name CDATA #REQUIRED>
<!ATTLIST modifierSpecieReference compartment CDATA #REQUIRED>
<!ATTLIST modifierSpecieReference stoichiometry CDATA "1">
<!ATTLIST modifierSpecieReference modifierType (enzyme|activator|inhibitor) #REQUIRED>
<!ATTLIST modifierSpecieReference isTotal CDATA #REQUIRED>
<!ATTLIST modifierSpecieReference cx CDATA #IMPLIED>
<!ATTLIST modifierSpecieReference cy CDATA #IMPLIED>
<!ELEMENT modifierComplex (specieReference)>
<!ELEMENT multiArmsReaction EMPTY>
<!ATTLIST multiArmsReaction cx CDATA #IMPLIED>
<!ATTLIST multiArmsReaction cy CDATA #IMPLIED>
<!ELEMENT listOfWhiteBoxes (whitebox+)>
<!ATTLIST listOfWhiteBoxes numberOfWhiteBoxes CDATA #REQUIRED>
<!ELEMENT whiteboxes (storedSpecie*, storedReaction*, storedModifier*, storedWhitebox*)>
<!ATTLIST whiteboxes whiteboxID CDATA #REQUIRED>
<!ATTLIST whiteboxes isCompression (true|false) "true">
<!ELEMENT storedSpecie EMPTY>
<!ATTLIST storedSpecie specieID CDATA #REQUIRED>
<!ATTLIST storedSpecie reactionID CDATA #REQUIRED>
<!ELEMENT storedReaction EMPTY>
<!ATTLIST storedReaction reactionID CDATA #REQUIRED>
<!ELEMENT storedModifier EMPTY>
<!ATTLIST storedModifier reactionID CDATA #REQUIRED>
<!ELEMENT storedWhitebox EMPTY>
<!ATTLIST storedWhitebox whiteboxID CDATA #REQUIRED>